Lecture title - Neoplasia: Genes and cancer

106 important questions on Lecture title - Neoplasia: Genes and cancer

What are hallmarks of cancer?

Acquired functional capabilities of cancer cells that allow them to survive and proliferate

List two enabling factors of cancer

1. Genomic instability (mutator phenotype)
2. Tumour-promoting inflammation

Mutations in what type of genes allows acquisition of hallmarks of cancer?

Mutations in critical genes
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What type of control is cellular proliferation under?

Genetic control

When does the transformation of normal somatic cell to malignant tumour take place?

Within the life of the individual

Does cancer development get inherited directly as a tumour?

No. The tumour must start anew in each individual.

What does an organism pass on to offspring in relation to cancer?

Anti-tumour mechanisms (protective mechanisms) that continue to evolve in the individual that has been passed down to

What happens to potential tumour cells under normal protective mechanisms?

1. repaired and returned to normal
2. Programmed cell death (apoptosis)

Several mutations in different genes must accumulate in how many cells to become neoplastic?

1 or several cells

Cells lose growth control in favour of what after several mutations in different genes?

In favour of aggressive growth properties

How many successive mutations were previously believed necessary to convert a normal cell into an invasive carcinoma?

Approximately 6–7 successive mutations.

Why should cancers theoretically be rare if 6 mutations are required in 1 cell?

The probability of a single cell independently acquiring 6 specific mutations is extremely low.

Why are cancers not as rare as predicted by the 6-mutation model?

Because certain mutations increase the likelihood of additional mutations occurring.

How can some mutations increase the chance of further mutations?

Either enhances cell proliferation or affect stability of genome

Why does increased cell proliferation raise cancer risk?

More cell divisions create a larger target population for additional mutations.

What is the consequence of genomic instability in cancer development?

It accelerates the rate of successive mutation accumulation.

On average, how many genes display mutation expected to alter proteins in common tumours, according to genome wide sequencing?

33-66 genes

What are driver mutations?

Mutations that promote/"drive" tumorigenesis

How many drive gene mutations does a typical tumour contain?

2 to 8

What are passenger mutations?

Mutations that are not drive mutations and doesn't confer any selective growth advantage

How many pathways can drive genes be classified into and what cellular processes do these pathways regulate?

12 signalling pathways that regulate cell fate, cell survival, and genome maintenance

Are most cancer mutations somatic or germline?

Most mutations are somatic.

What does a somatic mutation mean in cancer?

It is acquired during life, only affecting individual, and is limited to neoplastic (tumour) cells.

What are germline mutations?

Inherited mutations that cause hereditary forms of cancer

Give examples of hereditary cancer syndromes with strong family history.

  • Retinoblastoma
  • Familial Adenomatous Polyposis (FAP)
  • Neurofibromatosis

How does germline mutations predispose an individual to certain types of cancer?

The inherited mutation increases risk but does not guarantee cancer.

Give examples of familial cancer clustering

  • Breast cancer
  • Ovarian cancer
  • Colorectal cancer
  • What are syndromes of defective DNA repair?

    Conditions where inherited germline mutations impair DNA repair mechanisms.

    Give examples of inherited DNA repair syndromes linked to cancer.

  • HNPCC (Lynch syndrome)
  • Xeroderma pigmentosum (XP)
  • Compare somatic vs germline mutations in cancer.

    Somatic: Acquired, limited to tumour cells, not inherited
    Germline: inherited, present in all cells, predisposes to cancer

    What are the 4 basic gene types mutated in malignant tumours?

  • Proto-oncogenes
  • Tumour suppressor genes
  • Apoptosis-regulating genes
  • DNA repair genes
  • What is the normal function of proto-oncogenes?

    Promote controlled cell proliferation.

    What type of mutation converts a proto-oncogene into an oncogene?

    Gain-of-function mutations that create cells that are excessively or inappropriately active

    Are oncogene mutations dominant or recessive?

    Dominant as it only needs one mutant allele to affect phenotype

    Where were proto-oncogenes first identified?

    In RNA tumour viruses

    What are v-onc genes?

    Viral oncogenes that can transform cells by affecting cell proliferation, resulting in tumours

    What are c-onc genes?

    Proto-oncogenes that are part of normal cells.

    Why are proto-oncogenes highly conserved in evolution?

    They perform essential functions in cell cycle, division, and differentiation.

    What are the 5 functional classes of proto-oncogenes?

  • Growth factors
  • Growth factor receptors
  • Signal transducers
  • Nuclear transcription factors
  • Cell cycle regulators
  • What types of tumours show 33–66 mutated genes on sequencing?

    Colon, breast, brain, pancreas.

    What are the 4 mechanisms of oncogene activation?

  • Translocation
  • Point mutation
  • Amplification
  • Gene insertion
  • How does translocation activate an oncogene?

    Moves gene to a transcriptionally active site, inducing overexpression.

    Which oncogene is activated in Burkitt lymphoma?

    C-myc

    What is the characteristic Burkitt lymphoma translocation in 75-85% of cases?

    t(8;14)(q24;q32)

    What gene does MYC translocate next to in Burkitt lymphoma?

    Immunoglobulin heavy chain gene.

    How do point mutations activate oncogenes?

    Single base substitution → altered protein (amino acid sequence)

    What mechanism activates RAS oncogenes?

    Point mutation

    What is the effect of RAS point mutation?

    Hyperactive cell signalling

    How does gene amplification activate oncogenes?

    Insertion of multiple oncogene copies → excessive oncoprotein production → excessive cell proliferation

    What oncogene is amplified in neuroblastoma?

    N-myc

    How does gene insertion activate oncogenes?

    Insertion of promoter/enhancer near oncogene → overexpression (excessive oncoprotein)

    What kind of oncogene activation causes retrovirus?

    Gene insertion

    What is the quantitative change from activation of oncogenes?

    Increase in the inappropriate production of unaltered/normal product

    What is the qualitative change from activation of oncogenes?

    Production of a modified product

    What is the normal function of tumour suppressor genes (TSGs)?

    Prevent uncontrolled cell growth.

    What happens to TSGs in tumour cells?

    They are usually mutated or lost

    How many tumour suppressor gene alleles must be inactivated for tumour formation?

    Both alleles, requiring 2 mutational events

    Is one functional TSG allele sufficient?

    Yes — one working allele can suppress tumour development.

    What are gatekeeper tumour suppressor genes?

    Genes that directly inhibit cell proliferation or promote apoptosis.

    What are caretaker tumour suppressor genes?

    Genes that maintain genome integrity through DNA repair.

    What is loss of heterozygosity (LOH)?

    Loss of one allele of a tumour suppressor gene from a mutational event

    How is LOH detected?

    Comparing polymorphic markers in normal tissue (2 TSG alleles) with tumour tissue (1 TSG allele, 1 lost)

    What does Knudson’s two-hit hypothesis state?

    Two mutational events are required to inactivate both copies of a tumour suppressor gene.

    What is the first and second hit in hereditary cases, according to Kudson's two-hit hypothesis?

    1st hit: germline mutations from affected parent
    2nd hit: somatic mutation in cells that already carry mutations

    How do sporadic cancers acquire both hits?

    Both occur somatically in the same cell.

    What gene is mutated in retinoblastoma?

    Both alleles of RB1 gene

    What is the normal function of RB1?

    Regulation of cell cycle

    What is the incidence of retinoblastoma?

    Approximately 1 in 20,000 births.

    What proportion of retinoblastoma cases are sporadic?

    60% of cases

    What is the molecular weight of p53 gene?

    53 kD

    What phase of the cell cycle is regulated by p53?

    Entry into S phase

    What happens when normal p53 detects DNA damage?

    Interacts with proteins to repair DNA damage or mediate apoptosis

    What happens when p53 is mutated?

    DNA damage is not repaired and cell survives, producing daughter cells with p53 mutations

    In what proportion of tumours is p53 somatically mutated?

    50%

    Which syndrome is associated with germline p53 mutations?

    Li-Fraumeni syndrome

    What cancers are associated with Li-Fraumeni syndrome?

    Familial multiple and diverse types of tumours

    What genes are associated with inherited breast cancer susceptibility?

    BRCA1 and BRCA2.

    What percentage of breast cancers are due to BRCA mutations?

    10–15%.

    What functions do BRCA proteins perform?

    Cell cycle control
    Genomic stability
    Homologous recombination (in meiosis)
    DNA repair

    What are apoptosis regulating genes?

    Genes that prevent/induce apoptosis

    Which protein family regulates apoptosis?

    BCL-2 family of proteins

    Which BCL-2 proteins are pro-apoptotic?

    BAX and BAK.

    Which BCL-2 proteins are anti-apoptotic?

    BCL-2 and BCL-XL.

    Which apoptosis regulating gene is activated in 85% of follicular B-cell lymphoma from translocation?

    BCL2 (anti-apoptotic)

    What is the role of DNA repair genes?

    Correct DNA damage and replication errors. "proofreading"

    What happens when DNA repair genes are defective?

    Mutations accumulate in other genes (like oncogenes, tumour suppresor genes)

    What are genomic instability syndromes?

    Inherited defects that predispose to cancer.

    What syndrome involves mismatch repair defects?

    Hereditary nonpolyposis colorectal cancer (HNPCC)

    What percentage of colon cancers are due to HNPCC?

    2-4%

    Which mismatch repair genes are commonly mutated in HNPCC?

    MSH2 (60%), MLH1(30%), MSH6

    Which tumour is classically explained by the two-hit hypothesis?

    Retinoblastoma (tumour of the eye in infancy and childhood)

    What repair defect causes xeroderma pigmentosum?

    Nucleotide excision repair defect (UV damaged DNA)

    Which syndrome involves a DNA helicase defect?

    Bloom syndrome.

    What does the BLM gene encode for?

    DNA helicase

    What condition involves hypersensitivity to DNA cross-linking agents?

    Fanconi Anaemia

    What is the major difference between tumour suppressor genes and oncogenes with repair genes?

    Repair genes don't affect cell growth directly

    In the bus analogy, what do oncogenes represent?

    Accelerator

    In the bus analogy, what do tumour suppressor genes represent?

    Brakes

    What does “jamming the accelerator” represent?

    Gain-of-function oncogene mutation.

    What does brake failure represent?

    Loss of tumour suppressor gene function.

    What does sabotage of nuts and bolts represent?

    Defective/inactive tumour suppressor, DNA repair, apoptosis genes

    What is the adenoma–carcinoma sequence?

    Progressive accumulation of mutations leading to carcinoma.

    Is mutation order or accumulation more important in cancer development?

    Accumulation of mutations.

    What methods are used for lab diagnosis of cancer?

    Morphology, tumour markers, molecular diagnosis, molecular profiling

    What molecular techniques are used in cancer diagnosis?

    PCR, FISH, sequencing, expression profiles

    What is molecular profiling used for?

    Targeted therapy

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